User Guide — IGEM

Reference for the client-side modules of the igem package: loading data, describing it, modifying / cleaning it, analysing it, plotting the results, and reporting biological annotations from the IGEM knowledge graph. Each page documents what one module does in depth, and the report catalogue lists every report available on the server.

For end-to-end recipes that compose multiple modules together — phenotype analysis pipelines, GWAS / EWAS workflows, container and HPC submission patterns — see Cookbook.

If you are looking for the server-side programmatic surface (driving the ETL, calling NLP, registering custom reports), see User Guide — IGEM Server instead.

• Loading data
• Describing data
• Modifying data
• Analyzing data
• Plotting data
• Reporting data
• Report catalogue